Detection of G Protein-Coupled Receptor Complexes in Postmortem Human Brain by Proximity Ligation Assay
Ying Zhu
Division of Molecular Therapeutics, New York State Psychiatric Institute, New York, New York
Department of Psychiatry, Columbia University, New York, New York
Search for more papers by this authorAndrew J. Dwork
Department of Psychiatry, Columbia University, New York, New York
Department of Pathology and Cell Biology, Columbia University, New York, New York
Division of Molecular Imaging and Neuropathology, New York State Psychiatric Institute, New York, New York
Search for more papers by this authorPierre Trifilieff
Univ. Bordeaux, INRAE, Bordeaux INP, NutriNeuro, UMR 1286, F-33000, Bordeaux, France
Search for more papers by this authorCorresponding Author
Jonathan A. Javitch
Division of Molecular Therapeutics, New York State Psychiatric Institute, New York, New York
Department of Psychiatry, Columbia University, New York, New York
Department of Pharmacology, Columbia University, New York, New York
Corresponding author: [email protected]Search for more papers by this authorYing Zhu
Division of Molecular Therapeutics, New York State Psychiatric Institute, New York, New York
Department of Psychiatry, Columbia University, New York, New York
Search for more papers by this authorAndrew J. Dwork
Department of Psychiatry, Columbia University, New York, New York
Department of Pathology and Cell Biology, Columbia University, New York, New York
Division of Molecular Imaging and Neuropathology, New York State Psychiatric Institute, New York, New York
Search for more papers by this authorPierre Trifilieff
Univ. Bordeaux, INRAE, Bordeaux INP, NutriNeuro, UMR 1286, F-33000, Bordeaux, France
Search for more papers by this authorCorresponding Author
Jonathan A. Javitch
Division of Molecular Therapeutics, New York State Psychiatric Institute, New York, New York
Department of Psychiatry, Columbia University, New York, New York
Department of Pharmacology, Columbia University, New York, New York
Corresponding author: [email protected]Search for more papers by this authorAbstract
Combining immunological and molecular biological methods, the antibody-based proximity ligation assay (PLA) has been used for more than a decade to detect and quantify protein-protein interactions, protein modification, and protein expression in situ, including in brain tissue. However, the transfer of this technology to human brain samples requires a number of precautions due to the nature of the specimens and their specific processing. Here, we used the PLA brightfield detection technique to assess the expression of dopamine D2 receptor and adenosine A2A receptor and their proximity in human postmortem brains, and we developed a systematic random sampling method to help quantify the PLA signals. © 2019 by John Wiley & Sons, Inc.
Basic Protocol 1: Sample preparation and sectioning for PLA_BF
Basic Protocol 2: PLA_BF staining of brain tissue
Basic Protocol 3: Image acquisition and result analysis
Support Protocol: Luxol fast blue/cresyl violet staining
Literature Cited
- Abcam. (2019). Sectioning of paraffin-embedded tissue video protocol. Available from https://www.youtube.com/watch?v=Qsr9k9JY3FE.
- Beaulieu, J. M., & Gainetdinov, R. R. (2011). The physiology, signaling, and pharmacology of dopamine receptors. Pharmacological Reviews, 63(1), 182–217. doi: 10.1124/pr.110.002642.
- Biezonski, D. K., Trifilieff, P., Meszaros, J., Javitch, J. A., & Kellendonk, C. (2015). Evidence for limited D1 and D2 receptor coexpression and colocalization within the dorsal striatum of the neonatal mouse. Journal of Comparative Neurology, 523(8), 1175–1189. doi: 10.1002/cne.23730.
- Collins, L. E., Sager, T. N., Sams, A. G., Pennarola, A., Port, R. G., Shahriari, M., & Salamone, J. D. (2012). The novel adenosine A2A antagonist Lu AA47070 reverses the motor and motivational effects produced by dopamine D2 receptor blockade. Pharmacology, Biochemistry and Behavior, 100(3), 498–505. doi: 10.1016/j.pbb.2011.10.015.
- de Chaumont, F., Dallongeville, S., Chenouard, N., Herve, N., Pop, S., Provoost, T., … Olivo-Marin, J. C. (2012). Icy: An open bioimage informatics platform for extended reproducible research. Nature Methods, 9(7), 690–696. doi: 10.1038/nmeth.2075.
- Ferre, S., Bonaventura, J., Tomasi, D., Navarro, G., Moreno, E., Cortes, A., … Volkow, N. D. (2016). Allosteric mechanisms within the adenosine A2A-dopamine D2 receptor heterotetramer. Neuropharmacology, 104, 154–160. doi: 10.1016/j.neuropharm.2015.05.028.
- Fredriksson, S., Gullberg, M., Jarvius, J., Olsson, C., Pietras, K., Gustafsdottir, S. M., … Landegren, U. (2002). Protein detection using proximity-dependent DNA ligation assays. Nature Biotechnology, 20(5), 473–477. doi: 10.1038/nbt0502-473.
- Gomez, D., Shankman, L. S., Nguyen, A. T., & Owens, G. K. (2013). Detection of histone modifications at specific gene loci in single cells in histological sections. Nature Methods, 10(2), 171–177. doi: 10.1038/nmeth.2332.
- Gu, G. J., Wu, D., Lund, H., Sunnemark, D., Kvist, A. J., Milner, R., … Kamali-Moghaddam, M. (2013). Elevated MARK2-dependent phosphorylation of Tau in Alzheimer's disease. Journal of Alzheimers Disease, 33, 699–713. doi: 10.3233/JAD-2012-121357.
- Gullberg, M., Gustafsdottir, S. M., Schallmeiner, E., Jarvius, J., Bjarnegard, M., Betsholtz, C., … Fredriksson, S. (2004). Cytokine detection by antibody-based proximity ligation. Proceedings of the National Academy of Sciences of the United States of America, 101(22), 8420–8424. doi: 10.1073/pnas.0400552101.
- Gundersen, H. J., Jensen, E. B., Kieu, K., & Nielsen, J. (1999). The efficiency of systematic sampling in stereology–reconsidered. Journal of Microscopy, 193(Pt 3), 199–211. doi: 10.1046/j.1365-2818.1999.00457.x.
- Lonskaya, I., Desforges, N. M., Hebron, M. L., & Moussa, C. E. (2013). Ubiquitination increases parkin activity to promote autophagic alpha-synuclein clearance. PLoS One, 8(12), e83914. doi: 10.1371/journal.pone.0083914.
- Mészáros, J. (2019). Bayesian Optimized PLA Signal Sorting (BOPSS). Retrieved from https://github.com/neurojojo/BOPSS.
- Pardo, M., Lopez-Cruz, L., Valverde, O., Ledent, C., Baqi, Y., Muller, C. E., … Correa, M. (2012). Adenosine A2A receptor antagonism and genetic deletion attenuate the effects of dopamine D2 antagonism on effort-based decision making in mice. Neuropharmacology, 62(5-6), 2068–2077. doi: 10.1016/j.neuropharm.2011.12.033.
- Roussis, I. M., Guille, M., Myers, F. A., & Scarlett, G. P. (2016). RNA whole-mount in situ hybridisation proximity ligation assay (rISH-PLA), an assay for detecting RNA-protein complexes in intact cells. PLoS One, 11(1), e0147967. doi: 10.1371/journal.pone.0147967.
- Schneider, C. A., Rasband, W. S., & Eliceiri, K. W. (2012). NIH image to ImageJ: 25 years of image analysis. Nature Methods, 9(7), 671–675. doi: 10.1038/nmeth.2089.
- Sigma-Aldrich. (2015). Duolink®—The new standard in protein interaction studies. Available from https://www.youtube.com/watch?v=3N39R2as-84.
- Soderberg, O., Gullberg, M., Jarvius, M., Ridderstrale, K., Leuchowius, K. J., Jarvius, J., … Landegren, U. (2006). Direct observation of individual endogenous protein complexes in situ by proximity ligation. Nature Methods, 3(12), 995–1000. doi: 10.1038/nmeth947.
- Trifilieff, P., Rives, M. L., Urizar, E., Piskorowski, R. A., Vishwasrao, H. D., Castrillon, J., … Javitch, J. A. (2011). Detection of antigen interactions ex vivo by proximity ligation assay: Endogenous dopamine D2-adenosine A2A receptor complexes in the striatum. Biotechniques, 51(2), 111–118. doi: 10.2144/000113719.
- Urs, N. M., Peterson, S. M., & Caron, M. G. (2017). New concepts in dopamine D2 receptor biased signaling and implications for schizophrenia therapy. Biological Psychiatry, 81(1), 78–85. doi: 10.1016/j.biopsych.2016.10.011.
- West, M. J. (2012). Systematic versus random sampling in stereological studies. Cold Spring Harbor Protocols, 2012(12), pdb-top071837. doi: 10.1101/pdb.top071837.
10.1101/pdb.top071837 Google Scholar
- Zhu, Y., Mészáros, J., Walle, R., Fan, R., Sun, Z., Dwork, A. J., … Javitch, J. A. (2019). Detecting G protein-coupled receptor complexes in postmortem human brain with proximity ligation assay and a Bayesian classifier. BioTechniques, Advanced online publication. doi: 10.2144/btn-2019-0083.