Volume 62, Issue 1
UNIT

Analysis of Protein and Lipid Dynamics Using Confocal Fluorescence Recovery After Photobleaching (FRAP)

Charles A. Day

Department of Molecular Physiology and Biophysics, Vanderbilt University School of Medicine, Nashville, Tennessee

These authors contributed equally to this work

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Lewis J. Kraft

Chemical and Physical Biology Program, Vanderbilt University School of Medicine, Nashville, Tennessee

These authors contributed equally to this work

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Minchul Kang

Department of Molecular Physiology and Biophysics, Vanderbilt University School of Medicine, Nashville, Tennessee

These authors contributed equally to this work

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Anne K. Kenworthy

Department of Molecular Physiology and Biophysics, Vanderbilt University School of Medicine, Nashville, Tennessee

Chemical and Physical Biology Program, Vanderbilt University School of Medicine, Nashville, Tennessee

Department of Cell and Developmental Biology, Vanderbilt University School of Medicine, Nashville, Tennessee

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First published: 15 October 2012
Citations: 30

Abstract

Fluorescence recovery after photobleaching (FRAP) is a powerful, versatile, and widely accessible tool to monitor molecular dynamics in living cells that can be performed using modern confocal microscopes. Although the basic principles of FRAP are simple, quantitative FRAP analysis requires careful experimental design, data collection, and analysis. In this unit, we discuss the theoretical basis for confocal FRAP, followed by step‐by‐step protocols for FRAP data acquisition using a laser‐scanning confocal microscope for (1) measuring the diffusion of a membrane protein, (2) measuring the diffusion of a soluble protein, and (3) analysis of intracellular trafficking. Finally, data analysis procedures are discussed, and an equation for determining the diffusion coefficient of a molecular species undergoing pure diffusion is presented. Curr. Protoc. Cytom. 62:2.19.1‐2.19.29. © 2012 by John Wiley & Sons, Inc.

Number of times cited according to CrossRef: 30

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